This is generally accomplished by mapping the SIDs (Security Identifiers), that windows uses to uniquely identify a user. Unix does not have any notion of SIDs. But Samba users(local Unix users who also have a Samba account) do have SIDs associated with them mainly for the purpose of mapping windows users.
The SIDs can be set (else, Samba generates one automatically) by giving it along with pdbedit -a -U
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